Jennifer Nguyen

Bootwitch

Scientist building AI and research tools
10+ years in immunology research · Building with AI since 2024
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Welcome to Bootwitch.
Projects / projects-index

Things I've built

projects

I'm a scientist building software and a generalist by nature. Most of these projects started with something I wanted to make less frustrating: picking up a conversation, making sense of model behavior, starting a script, or getting a plate of data into a form I could actually use.

All of it was built with AI. Claude and ChatGPT are where I work a problem out; Claude Code and Codex write the implementation. Every project carries the same build credit because it is the honest one: both agents have been through every repository. Where the division of labour is worth knowing, the project page says so in its own words. Eighteen months ago I had never written code and had never used an AI model. These are grouped by subsystem rather than by date, but they were all built inside that window.

The work grew from there. Some projects are tools I use, some are experiments, and some are a closer look at a useful piece of a larger system.

A few places to start

ProjectThe idea
Context and Memory WorkspaceGive long-running AI conversations a memory I can return to
Bootwitch CLI ScaffoldStart a scripting project with the folders, scripts, and documentation already working together
96-Well Plate AnalyzerTurn plate maps and reader output into results I can inspect
Bootwitch Doctor — How I Work with AgentsCoordinate five coding agents around one architecture repair
Guided Portfolio ConversationGive the portfolio guide continuity without retaining complete conversations

Context and memory

How conversations become something useful for the next conversation.

Evals and interpretability

Tools for asking better questions about what the models are doing.

Attractor — Adaptive Context and Personalization describes Attractor's memory and context-delivery tool; Attractor — Context Research uses the same tool as a research instrument.

Developer tools and workflows

  • Bootwitch CLI Scaffold — a local project starter with guided setup, script generation, and documentation that follows the code. The main project page includes both recorded demonstrations.

Interface

Routing and orchestration

Observability and subsystems

Routing and observability are pieces of the larger projects, with their own pages so there is room to explain them.

A familiar way through each project

README is the introduction. ARCHITECTURE shows how it fits together. TECHNICAL gets into the interesting details. source contains selected scripts and excerpts, with context for what you're looking at.

Diagrams sit beside the explanations they support. Demos and research plans stay with their projects when they add something worth exploring. You can start with the overview and follow whatever catches your interest.